C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain, small subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588815 CAPNS1-002 ENSG00000126247 9606 + 19:36140127-36150352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588815 215.531±0.00 228.015±0.00 9.827±0.00 99.631±80.99 161.142±151.64 84.571±73.41 95.726±87.11 145.948±144.43 42.161±35.37 132.335±126.51 87.698±70.89 144.084±99.84 72.944±30.01 68.684±16.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006508 IEA:IBA proteolysis
GO:0008284 TAS positive regulation of cell proliferation
GO:0016020 IDA membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001845 Capns1-001 protein_coding Mus_musculus 0 1000
ENSMUST00000126116 Capns1-004 protein_coding Mus_musculus 0 857
ENSMUST00000108196 Capns1-002 protein_coding Mus_musculus 0 787
ENSMUST00000129761 Capns1-005 processed_transcript Mus_musculus 0 773
ENSMUST00000141851 Capns1-006 processed_transcript Mus_musculus 0 616
ENSMUST00000148973 Capns1-007 processed_transcript Mus_musculus 0 309

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