C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain, small subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126247 CAPNS1 9606 + 19:36139575-36150353 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246533 CAPNS1-001 36139575-36150352 protein_coding
  ENST00000586851 CAPNS1-012 36141179-36149866 protein_coding
  ENST00000586963 CAPNS1-010 36141593-36146279 protein_coding
  ENST00000587718 CAPNS1-003 36140108-36150349 protein_coding
  ENST00000588780 CAPNS1-007 36140968-36149993 protein_coding
  ENST00000588815 CAPNS1-002 36140127-36150352 protein_coding
  ENST00000589146 CAPNS1-004 36139953-36149912 protein_coding
  ENST00000589162 CAPNS1-014 36145373-36149580 retained_intron
  ENST00000590049 CAPNS1-011 36141159-36150353 non_stop_decay
  ENST00000590211 CAPNS1-013 36141190-36150349 protein_coding
  ENST00000590874 CAPNS1-008 36140123-36150001 protein_coding
  ENST00000591041 CAPNS1-006 36140608-36145840 protein_coding
  ENST00000592354 CAPNS1-009 36141303-36146228 protein_coding
  ENST00000592483 CAPNS1-005 36140110-36142307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246533ENST00000586851ENST00000588815ENST00000589146ENST00000590049ENST00000590211ENST00000590874ENST00000592354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246533 N/A N/A N/A N/A N/A N/A N/A N/A 1.934±0.00 N/A N/A N/A N/A N/A
ENST00000586851 N/A N/A N/A N/A N/A N/A N/A 2.382±0.00 N/A N/A N/A N/A N/A N/A
ENST00000588815 215.531±0.00 228.015±0.00 9.827±0.00 99.631±80.99 161.142±151.64 84.571±73.41 95.726±87.11 145.948±144.43 42.161±35.37 132.335±126.51 87.698±70.89 144.084±99.84 72.944±30.01 68.684±16.33
ENST00000589146 N/A N/A N/A N/A N/A 90.982±0.00 N/A N/A N/A N/A N/A N/A N/A 97.985±0.00
ENST00000590049 N/A N/A N/A N/A 10.419±0.00 8.400±0.00 3.442±0.00 N/A 7.749±0.00 10.750±0.00 6.943±0.00 91.172±82.40 112.663±0.00 60.131±0.00
ENST00000590211 N/A N/A N/A N/A N/A N/A N/A N/A 55.477±0.00 280.377±0.00 76.035±58.77 N/A N/A N/A
ENST00000590874 98.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.594±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006508 IEA:IBA proteolysis
GO:0008284 TAS positive regulation of cell proliferation
GO:0016020 IDA membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013804 capns1b calpain, small subunit 1 b protein_coding Danio_rerio
ENSDARG00000035329 capns1a calpain, small subunit 1 a protein_coding Danio_rerio
ENSMUSG00000001794 Capns1 calpain, small subunit 1 protein_coding Mus_musculus

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