C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C substrate 80K-H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589838 PRKCSH-001 ENSG00000130175 9606 + 19:11436118-11450940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000589838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000589838 102.542±0.00 68.524±0.00 5.281±0.00 27.919±26.72 29.952±28.39 49.007±45.75 17.437±0.00 31.858±22.53 36.308±29.19 30.870±26.23 28.721±0.00 81.326±47.62 112.496±22.38 111.772±20.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004G4 CIL_0004G4_0001 CGP 19:11384341-11435782
CIL_00016V CIL_00016V_0001 CGP 19:11420604-11450968
CIL_00016O CIL_00016O_0002 CGP 19:11435288-11481046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005080 IPI protein kinase C binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 NAS intracellular
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0006457 TAS protein folding
GO:0006491 IEA N-glycan processing
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0035556 NAS intracellular signal transduction
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044325 IPI ion channel binding
GO:0045087 TAS innate immune response
GO:0051219 IPI phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003493 Prkcsh-201 protein_coding Mus_musculus 0 1378
ENSMUST00000115331 Prkcsh-202 protein_coding Mus_musculus 0 1371

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