C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C substrate 80K-H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592741 PRKCSH-003 ENSG00000130175 9606 + 19:11435635-11450968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000592741
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000592741 17.406±0.00 15.773±0.00 8.377±6.76 17.467±15.42 5.457±0.00 13.884±0.00 19.354±0.00 8.831±0.00 38.271±22.70 65.780±7.83 22.621±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004G4 CIL_0004G4_0001 CGP 19:11384341-11435782
CIL_00016V CIL_00016V_0001 CGP 19:11420604-11450968
CIL_00016O CIL_00016O_0002 CGP 19:11435288-11481046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001889 IEA liver development
GO:0003723 IEA RNA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0006491 IEA N-glycan processing
GO:0006807 IEA nitrogen compound metabolic process
GO:0010977 IEA negative regulation of neuron projection development
GO:0051291 IEA protein heterooligomerization
GO:0072001 IEA renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115331 Prkcsh-202 protein_coding Mus_musculus 0 1419
ENSMUST00000003493 Prkcsh-201 protein_coding Mus_musculus 0 865

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