C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592942 TRIM47-006 ENSG00000132481 9606 - 17:75874523-75875591 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleOvaryPlacentaENST00000592942
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Ovary Placenta
ENST00000592942 10.631±0.00 1.662±0.00 0.794±0.00 3.597±2.30 0.690±0.00 3.111±0.00 3.386±2.18 2.136±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078U CIL_00078U_0001 CGP 17:75845699-75878575
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021120 Trim47-002 protein_coding Mus_musculus 0 665
ENSMUST00000106441 Trim47-001 protein_coding Mus_musculus 0 664
ENSMUST00000141531 Trim47-003 processed_transcript Mus_musculus 0 664

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