C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor 18 {ECO:0000313|Ensembl:ENSP00000471597}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593531 CTD-2207O23.3-001 ENSG00000268861 9606 + 19:7380964-7470245 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverMuscleOvaryENST00000593531
Transcript ID Bladder Breast Colon Liver Muscle Ovary
ENST00000593531 0.815±0.00 1.817±0.00 3.174±0.00 1.869±0.00 0.320±0.00 1.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000434 CIL_000434_0001 CGP 19:7112255-7383385
CIL_0004YI CIL_0004YI_0001 CGP 19:7348943-7472477

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004684 Arhgef18-001 protein_coding Mus_musculus 0 2159
ENSMUST00000131773 Arhgef18-002 retained_intron Mus_musculus 0 1550
ENSMUST00000156085 Arhgef18-003 retained_intron Mus_musculus 0 1480
ENSMUST00000145360 Arhgef18-006 retained_intron Mus_musculus 0 368
ENSMUST00000098966 A430078G23Rik-201 protein_coding Mus_musculus 0 259

Loading