C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rho/rac guanine nucleotide exchange factor (GEF) 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004684 Arhgef18-001 ENSMUSG00000004568 10090 + 8:3393038-3456601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004684 12.570±1.07 15.481±2.06 15.082±0.73 8.516±0.52 20.661±8.58 13.580±1.58 4.632±0.69 15.490±3.26 5.328±1.85 24.770±2.08 1.834±0.39 13.840±1.81 22.393±17.93 2.867±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YI CIL_0004YI_0002 CGP 8:3353415-3456601
CIL_0002U4 CIL_0002U4_0002 CGP 8:3393006-3467680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319670 ARHGEF18-002 protein_coding Homo_sapiens 0 2178
ENST00000359920 ARHGEF18-001 protein_coding Homo_sapiens 0 2159
ENST00000593531 CTD-2207O23.3-001 protein_coding Homo_sapiens 0 2159
ENST00000594665 ARHGEF18-003 protein_coding Homo_sapiens 0 1530
ENST00000617428 CTD-2207O23.3-201 protein_coding Homo_sapiens 0 2159

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