C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004YI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000263264-ENSG00000104880 CGP 9606 19:7348943-7472477
GeneTranscriptPositionBiotype
ENSG00000104880 (ARHGEF18)
Rho/Rac guanine nucleotide exchange factor (GEF) 18 		ENST00000319670 (ARHGEF18-002) 7395113-7472477 protein_coding
ENST00000359920 (ARHGEF18-001) 7439688-7472477 protein_coding
ENST00000594665 (ARHGEF18-003) 7447063-7472477 protein_coding
ENST00000595600 (ARHGEF18-005) 7441719-7444429 retained_intron
ENST00000599752 (ARHGEF18-006) 7395152-7441990 protein_coding
ENSG00000267852 (CTB-133G6.2)
 ENST00000596946 (CTB-133G6.2-001) 7390522-7395039 antisense
ENSG00000268861 (CTD-2207O23.3)
Rho guanine nucleotide exchange factor 18 {ECO:0000313|Ensembl:ENSP00000471597} 		ENST00000593531 (CTD-2207O23.3-001) 7380964-7470245 protein_coding
ENST00000617428 (CTD-2207O23.3-201) 7382834-7472477 protein_coding
CIL_0004YI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074497-ENSMUSG00000004568 CGP 10090 8:3353415-3456601
GeneTranscriptPositionBiotype
ENSMUSG00000004568 (Arhgef18)
rho/rac guanine nucleotide exchange factor (GEF) 18 		ENSMUST00000004684 (Arhgef18-001) 3393038-3456601 protein_coding
ENSMUST00000130587 (Arhgef18-005) 3393073-3429271 processed_transcript
ENSMUST00000131773 (Arhgef18-002) 3393006-3450640 retained_intron
ENSMUST00000145360 (Arhgef18-006) 3450758-3454268 retained_intron
ENSMUST00000145394 (Arhgef18-004) 3393073-3429639 protein_coding
ENSMUST00000156085 (Arhgef18-003) 3437011-3456600 retained_intron
ENSMUSG00000074497 (A430078G23Rik)
RIKEN cDNA A430078G23 gene 		ENSMUST00000098966 (A430078G23Rik-201) 3353415-3390295 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YI_0001ENSG00000104880ENST00000319670ENST00000359920ENST00000594665ENST00000595600ENST00000599752ENSG00000267852ENST00000596946ENSG00000268861ENST00000593531ENST00000617428CIL_0004YI_0002ENSMUSG00000004568ENSMUST00000004684ENSMUST00000130587ENSMUST00000131773ENSMUST00000145360ENSMUST00000145394ENSMUST00000156085ENSMUSG00000074497ENSMUST00000098966
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YI_0001ENSG00000104880ENST00000319670ENST00000594665ENST00000599752ENSG00000267852ENST00000596946ENSG00000268861ENST00000593531ENST00000617428CIL_0004YI_0002ENSMUSG00000004568ENSMUST00000004684ENSMUST00000131773ENSMUST00000145360ENSMUSG00000074497ENSMUST00000098966
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104880 ENST00000319670 2.240±0.00 6.066±0.00 0.630±0.00 5.949±0.00 2.713±0.00 2.790±0.00 1.093±0.00 4.259±3.36 1.236±0.25 4.599±0.00 0.749±0.57 4.167±2.76 4.277±0.88 2.501±0.42
ENST00000359920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594665 N/A 10.847±0.00 N/A 3.604±0.00 3.347±0.00 2.497±0.00 0.754±0.00 5.909±0.00 0.968±0.00 3.000±0.00 0.516±0.00 5.761±0.77 2.866±0.02 4.667±0.00
ENST00000595600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.804±0.00 N/A N/A N/A
ENSG00000267852 ENST00000596946 0.087±0.00 N/A N/A 0.324±0.00 0.628±0.00 N/A 0.163±0.00 0.090±0.00 0.039±0.00 0.737±0.00 N/A 0.501±0.15 0.451±0.00 2.604±2.12
ENSG00000268861 ENST00000593531 N/A N/A 0.815±0.00 N/A 1.817±0.00 3.174±0.00 N/A N/A 1.869±0.00 N/A 0.320±0.00 1.106±0.00 N/A N/A
ENST00000617428 N/A 6.615±0.00 N/A N/A N/A 0.929±0.00 N/A N/A N/A N/A 0.635±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004568 ENSMUST00000004684 12.570±1.07 15.481±2.06 15.082±0.73 8.516±0.52 20.661±8.58 13.580±1.58 4.632±0.69 15.490±3.26 5.328±1.85 24.770±2.08 1.834±0.39 13.840±1.81 22.393±17.93 2.867±0.94
ENSMUST00000130587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131773 N/A N/A N/A N/A 4.430±0.00 N/A 1.098±0.07 N/A N/A N/A N/A N/A N/A 1.012±0.00
ENSMUST00000145360 N/A 8.672±1.23 N/A N/A 19.390±0.00 14.760±3.43 N/A N/A N/A N/A N/A 18.915±2.83 N/A N/A
ENSMUST00000145394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074497 ENSMUST00000098966 0.965±0.41 0.392±0.11 0.412±0.23 0.456±0.43 4.045±1.87 1.349±0.28 0.362±0.07 0.695±0.33 1.093±0.56 1.937±0.48 0.084±0.05 0.856±0.42 0.470±0.37 1.237±0.72

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