C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SURP and G patch domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000594773 SUGP2-002 ENSG00000064607 9606 - 19:18990890-19033816 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLiverLungMuscleOvaryTestisENST00000594773
Transcript ID Adrenal Bladder Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000594773 3.597±0.00 2.688±0.00 2.378±0.08 3.037±0.00 0.968±0.00 1.279±0.00 1.941±0.00 1.342±0.00 4.555±2.06 27.060±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164403 Sugp2-201 protein_coding Mus_musculus 0 1164
ENSMUST00000136758 Sugp2-003 retained_intron Mus_musculus 0 1164
ENSMUST00000093458 Sugp2-001 protein_coding Mus_musculus 0 1164
ENSMUST00000131489 Sugp2-002 nonsense_mediated_decay Mus_musculus 0 1164
ENSMUST00000126239 Sugp2-005 protein_coding Mus_musculus 0 370
ENSMUST00000156330 Sugp2-004 retained_intron Mus_musculus 0 339
ENSMUST00000155771 Sugp2-008 protein_coding Mus_musculus 0 309

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