C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000596148 TRAPPC5-001 ENSG00000181029 9606 + 19:7680843-7687703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000596148
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000596148 0.870±0.00 0.506±0.26 0.152±0.00 0.438±0.30 0.131±0.00 0.363±0.22 0.102±0.00 0.163±0.00 0.259±0.16 0.365±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AR CIL_0005AR_0001 CGP 19:7680843-7702146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016192 IEA vesicle-mediated transport
GO:0030008 IEA TRAPP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044857 Trappc5-001 protein_coding Mus_musculus 0 741
ENSMUST00000038014 Dnajc16-001 protein_coding Mus_musculus 0.00000001 68
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0000006 62

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