C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602897 PPFIA3-008 ENSG00000177380 9606 + 19:49148101-49151021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000602897
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000602897 2.132±0.00 0.370±0.00 1.602±0.00 0.247±0.00 1.221±0.00 0.326±0.00 3.716±0.00 1.192±0.00 1.870±0.47 0.653±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0007269 ISS neurotransmitter secretion
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048786 TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003961 Ppfia3-201 protein_coding Mus_musculus 0 913
ENSMUST00000137578 Ppfia3-003 protein_coding Mus_musculus 0 913
ENSMUST00000131154 Ppfia3-002 retained_intron Mus_musculus 0 913
ENSMUST00000107779 Ppfia3-001 protein_coding Mus_musculus 0 913
ENSMUST00000130143 Ppfia3-004 processed_transcript Mus_musculus 0 531
ENSMUST00000151970 Ppfia3-005 processed_transcript Mus_musculus 0 529

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