C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: obscurin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000603926 OBSL1-016 ENSG00000124006 9606 - 2:219555166-219571289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000603926
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000603926 1.294±0.00 2.036±0.00 0.478±0.00 4.734±0.00 1.500±1.19 1.555±0.00 6.945±0.00 1.124±0.00 21.257±2.48 4.478±0.52 6.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0007010 NAS cytoskeleton organization
GO:0007030 IMP Golgi organization
GO:0007088 IMP regulation of mitosis
GO:0008093 NAS cytoskeletal adaptor activity
GO:0014704 TAS intercalated disc
GO:0030018 TAS Z disc
GO:0031430 TAS M band
GO:0034067 IMP protein localization to Golgi apparatus
GO:0048471 TAS perinuclear region of cytoplasm
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0055003 NAS cardiac myofibril assembly
GO:1990393 IDA 3M complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113567 Obsl1-001 protein_coding Mus_musculus 0 4220
ENSMUST00000155084 Obsl1-012 protein_coding Mus_musculus 0 3581
ENSMUST00000113565 Obsl1-010 protein_coding Mus_musculus 0 3373
ENSMUST00000145306 Obsl1-003 retained_intron Mus_musculus 0 2473
ENSMUST00000127507 Obsl1-005 retained_intron Mus_musculus 0 1866
ENSMUST00000129403 Obsl1-004 retained_intron Mus_musculus 0 1786
ENSMUST00000132252 Obsl1-006 protein_coding Mus_musculus 0 1243
ENSMUST00000150293 Obsl1-007 processed_transcript Mus_musculus 0 259

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