C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: all-trans retinoic acid-induced differentiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000606999 ATRAID-007 ENSG00000138085 9606 + 2:27212311-27217156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000606999
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000606999 19.595±0.00 25.122±0.00 6.387±0.00 8.806±5.07 14.373±10.47 11.535±4.26 18.159±12.34 17.553±13.40 10.357±0.00 22.720±18.50 16.144±11.64 47.563±33.81 59.122±11.67 46.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0001 CGP 2:27149004-27212958
CIL_0000EI CIL_0000EI_0001 CGP 2:27199587-27217178
CIL_0000EH CIL_0000EH_0001 CGP 2:27212027-27243943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005886 IEA plasma membrane
GO:0010468 IDA regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030501 IDA positive regulation of bone mineralization
GO:0033689 IDA negative regulation of osteoblast proliferation
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0048471 IDA perinuclear region of cytoplasm
GO:2000599 IDA negative regulation of cyclin catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000013766 Atraid-001 protein_coding Mus_musculus 0 627
ENSMUST00000114659 Atraid-005 protein_coding Mus_musculus 0 562
ENSMUST00000114660 Atraid-002 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000153643 Atraid-006 protein_coding Mus_musculus 0 475
ENSMUST00000138309 Atraid-004 retained_intron Mus_musculus 0 340
ENSMUST00000133215 Atraid-007 processed_transcript Mus_musculus 0 274
ENSMUST00000130250 Atraid-003 protein_coding Mus_musculus 0 235
ENSMUST00000173215 Atraid-008 protein_coding Mus_musculus 0 206

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