C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short coiled-coil protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614192 SCOC-202 ENSG00000153130 9606 + 4:140373510-140382556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000614192
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000614192 3.920±0.00 4.720±0.00 21.706±15.04 5.293±4.21 5.033±3.66 4.223±3.15 3.420±1.45 2.985±0.00 5.610±2.39 1.858±0.61 12.583±7.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046O CIL_00046O_0002 CGP 4:139716753-140385726
CIL_0006MV CIL_0006MV_0002 CGP 4:140257286-140427968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005802 IDA trans-Golgi network
GO:0016020 IEA membrane
GO:0016239 IDA positive regulation of macroautophagy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167525 Scoc-202 protein_coding Mus_musculus 0 634
ENSMUST00000081506 Scoc-201 protein_coding Mus_musculus 0 597
ENSMUST00000172475 Gm7335-001 processed_pseudogene Mus_musculus 0 387

Loading