C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sal-like 3 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057950 Sall3-201 ENSMUSG00000024565 10090 - 18:80966376-80986578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057950
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057950 0.009±0.01 0.066±0.02 3.207±2.38 0.012±0.01 0.012±0.01 0.706±0.12 0.005±0.01 0.012±0.01 0.007±0.00 0.029±0.02 0.054±0.03 0.734±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HP CIL_0008HP_0002 VISTA 18:80487642-81088565
CIL_0008IX CIL_0008IX_0002 VISTA 18:80511437-81112175
CIL_0008KF CIL_0008KF_0002 VISTA 18:80518312-81119092
CIL_0007MA CIL_0007MA_0004 UCNEbase 18:80787700-81852865
CIL_00094I CIL_00094I_0002 VISTA 18:80831478-81432546
CIL_0008XA CIL_0008XA_0002 VISTA 18:80852972-81454539
CIL_0007YX CIL_0007YX_0002 VISTA 18:80865710-81467180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021891 IMP olfactory bulb interneuron development
GO:0035136 IGI forelimb morphogenesis
GO:0035137 IGI hindlimb morphogenesis
GO:0045879 IGI negative regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251020 SALL1-001 protein_coding Homo_sapiens 0 300
ENST00000440970 SALL1-201 protein_coding Homo_sapiens 0 300
ENST00000450879 SALL2-006 protein_coding Homo_sapiens 3e-17 95
ENST00000536229 SALL3-006 protein_coding Homo_sapiens 0 2475
ENST00000537592 SALL3-001 protein_coding Homo_sapiens 0 1616
ENST00000546363 SALL2-004 protein_coding Homo_sapiens 3e-17 95
ENST00000570206 SALL1-003 protein_coding Homo_sapiens 0 300
ENST00000572106 SALL3-002 protein_coding Homo_sapiens 0 2460
ENST00000573324 SALL3-003 protein_coding Homo_sapiens 0 462
ENST00000573592 SALL3-003 protein_coding Homo_sapiens 0 462
ENST00000575389 SALL3-002 protein_coding Homo_sapiens 0 2477
ENST00000576809 SALL3-001 protein_coding Homo_sapiens 0 1600
ENST00000612458 SALL3-203 protein_coding Homo_sapiens 0 2470
ENST00000614342 SALL2-001 protein_coding Homo_sapiens 5e-17 95
ENST00000614625 SALL3-202 protein_coding Homo_sapiens 0 2453
ENST00000614883 SALL3-204 protein_coding Homo_sapiens 0 1616
ENST00000616649 SALL3-201 protein_coding Homo_sapiens 0 2470

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