C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615637 FOXD1-003 ENSG00000251493 9606 - 5:73446256-73448362 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000615637
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000615637 0.255±0.00 0.614±0.00 0.112±0.03 0.057±0.00 0.167±0.00 0.013±0.00 1.426±0.00 0.345±0.00 0.448±0.02 0.967±0.30 2.173±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001658 IEA branching involved in ureteric bud morphogenesis
GO:0001822 IEA kidney development
GO:0003677 IDA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IEA axon guidance
GO:0008301 IDA DNA binding, bending
GO:0010628 ISS positive regulation of gene expression
GO:0030513 ISS positive regulation of BMP signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060678 ISS dichotomous subdivision of terminal units involved in ureteric bud branching
GO:0072076 IEA nephrogenic mesenchyme development
GO:0072210 IEA metanephric nephron development
GO:0072213 ISS metanephric capsule development
GO:0072267 ISS metanephric capsule specification
GO:0072268 IEA pattern specification involved in metanephros development
GO:0090184 ISS positive regulation of kidney development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105098 Foxd1-001 protein_coding Mus_musculus 0 1011
ENSMUST00000068654 Foxd2-001 protein_coding Mus_musculus 0 462
ENSMUST00000087285 Foxd3-001 protein_coding Mus_musculus 0 412
ENSMUST00000058600 Foxd4-201 protein_coding Mus_musculus 0 342
ENSDART00000144772 BX664614.1-201 pseudogene Danio_rerio 0 298
ENSDART00000017695 foxd3-001 protein_coding Danio_rerio 0 298

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