C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087285 Foxd3-001 ENSMUSG00000067261 10090 + 4:99656299-99658622 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087285 0.159±0.02 0.697±0.31 1.383±0.46 0.983±0.35 0.427±0.13 1.457±0.19 0.318±0.08 0.053±0.03 0.026±0.02 0.224±0.11 0.591±0.09 0.130±0.05 0.087±0.08 0.176±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766
CIL_0002G4 CIL_0002G4_0002 CGP 4:99656299-99763460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IDA in utero embryonic development
GO:0001829 IMP trophectodermal cell differentiation
GO:0001892 IMP embryonic placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IC nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 TAS transcription, DNA-templated
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144772 BX664614.1-201 pseudogene Danio_rerio 0 394
ENSDART00000017695 foxd3-001 protein_coding Danio_rerio 0 394
ENSDART00000098940 FOXL2-201 protein_coding Danio_rerio 5e-19 100
ENSDART00000077753 foxc1b-001 protein_coding Danio_rerio 0.00000000000005 84
ENST00000306268 FOXI1-001 protein_coding Homo_sapiens 3e-26 124
ENST00000306507 FOXD4L1-001 protein_coding Homo_sapiens 0 342
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 0 272
ENST00000334793 FOXD2-001 protein_coding Homo_sapiens 0 420
ENST00000335071 FOXE3-001 protein_coding Homo_sapiens 0 246
ENST00000342833 FOXD4L3-001 protein_coding Homo_sapiens 0 331
ENST00000371116 FOXD3-001 protein_coding Homo_sapiens 0 2117
ENST00000375978 FOXS1-001 protein_coding Homo_sapiens 1e-33 148
ENST00000377413 FOXD4L4-001 protein_coding Homo_sapiens 0 337
ENST00000377420 FOXD4L5-001 protein_coding Homo_sapiens 0 337
ENST00000380874 FOXC1-001 protein_coding Homo_sapiens 0 250
ENST00000382500 FOXD4-001 protein_coding Homo_sapiens 0 337
ENST00000388920 FOXI2-001 protein_coding Homo_sapiens 9e-28 130
ENST00000428390 FOXI3-001 protein_coding Homo_sapiens 6e-19 100
ENST00000449804 FOXI1-002 protein_coding Homo_sapiens 0.0000000000006 81
ENST00000615637 FOXD1-003 protein_coding Homo_sapiens 0 412
ENST00000622588 FOXD4L6-001 protein_coding Homo_sapiens 0 331

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