C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105098 Foxd1-001 ENSMUSG00000078302 10090 + 13:98354242-98356703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105098
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105098 0.019±0.01 0.937±0.29 0.007±0.00 1.805±0.99 0.103±0.02 0.027±0.01 0.084±0.02 1.137±0.10 0.011±0.00 0.119±0.02 0.042±0.02 0.028±0.01 0.110±0.09 0.023±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001658 IDA branching involved in ureteric bud morphogenesis
GO:0001822 IMP kidney development
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0008301 ISO DNA binding, bending
GO:0010628 IMP positive regulation of gene expression
GO:0030513 IMP positive regulation of BMP signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060678 IMP dichotomous subdivision of terminal units involved in ureteric bud branching
GO:0072076 IMP nephrogenic mesenchyme development
GO:0072210 IMP metanephric nephron development
GO:0072213 IMP metanephric capsule development
GO:0072267 IMP metanephric capsule specification
GO:0072268 IMP pattern specification involved in metanephros development
GO:0090184 IMP positive regulation of kidney development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144772 BX664614.1-201 pseudogene Danio_rerio 0 333
ENSDART00000017695 foxd3-001 protein_coding Danio_rerio 0 333
ENSDART00000077753 foxc1b-001 protein_coding Danio_rerio 0.00000007 64
ENST00000259806 FOXF2-001 protein_coding Homo_sapiens 4e-30 137
ENST00000306507 FOXD4L1-001 protein_coding Homo_sapiens 0 315
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 0 209
ENST00000334793 FOXD2-001 protein_coding Homo_sapiens 0 481
ENST00000335071 FOXE3-001 protein_coding Homo_sapiens 0 263
ENST00000342833 FOXD4L3-001 protein_coding Homo_sapiens 0 309
ENST00000371116 FOXD3-001 protein_coding Homo_sapiens 0 409
ENST00000377413 FOXD4L4-001 protein_coding Homo_sapiens 0 309
ENST00000377420 FOXD4L5-001 protein_coding Homo_sapiens 0 309
ENST00000380874 FOXC1-001 protein_coding Homo_sapiens 0 220
ENST00000382500 FOXD4-001 protein_coding Homo_sapiens 0 298
ENST00000396057 FOXB1-001 protein_coding Homo_sapiens 0 224
ENST00000615637 FOXD1-003 protein_coding Homo_sapiens 0 1011
ENST00000622588 FOXD4L6-001 protein_coding Homo_sapiens 0 309

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