C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058600 Foxd4-201 ENSMUSG00000051490 10090 - 19:24898965-24901309 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungOvaryPlacentaTestisENSMUST00000058600
Transcript ID Adipose Adrenal Brain Heart Liver Lung Ovary Placenta Testis
ENSMUST00000058600 0.009±0.00 0.026±0.00 0.089±0.05 0.015±0.00 0.054±0.05 0.073±0.04 0.028±0.00 0.018±0.01 0.162±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AF CIL_0009AF_0002 VISTA 19:24645396-25246544
CIL_0000VT CIL_0000VT_0004 CGP 19:24898965-24961616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144772 BX664614.1-201 pseudogene Danio_rerio 0 246
ENSDART00000017695 foxd3-001 protein_coding Danio_rerio 0 246
ENSDART00000077753 foxc1b-001 protein_coding Danio_rerio 0.000003 58
ENST00000306268 FOXI1-001 protein_coding Homo_sapiens 1e-19 102
ENST00000306507 FOXD4L1-001 protein_coding Homo_sapiens 0 584
ENST00000320354 FOXC2-001 protein_coding Homo_sapiens 6e-39 167
ENST00000334793 FOXD2-001 protein_coding Homo_sapiens 0 342
ENST00000342833 FOXD4L3-001 protein_coding Homo_sapiens 0 590
ENST00000371116 FOXD3-001 protein_coding Homo_sapiens 0 370
ENST00000375978 FOXS1-001 protein_coding Homo_sapiens 6e-31 139
ENST00000377413 FOXD4L4-001 protein_coding Homo_sapiens 0 590
ENST00000377420 FOXD4L5-001 protein_coding Homo_sapiens 0 595
ENST00000380874 FOXC1-001 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000382500 FOXD4-001 protein_coding Homo_sapiens 0 579
ENST00000388920 FOXI2-001 protein_coding Homo_sapiens 6e-20 104
ENST00000428390 FOXI3-001 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000449804 FOXI1-002 protein_coding Homo_sapiens 0.000000000008 77
ENST00000615637 FOXD1-003 protein_coding Homo_sapiens 0 342
ENST00000622588 FOXD4L6-001 protein_coding Homo_sapiens 0 595

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