C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: protocadherin alpha 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616325 PCDHA11-002 ENSG00000249158 9606 + 5:140868183-140871600 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000616325
Transcript ID Breast
ENST00000616325 2.053±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115657 Pcdha10-205 protein_coding Mus_musculus 0 1993
ENSMUST00000047614 Pcdha10-203 protein_coding Mus_musculus 0 1044
ENSMUST00000070797 Pcdha10-204 protein_coding Mus_musculus 0 968
ENSMUST00000115659 Pcdha10-207 protein_coding Mus_musculus 0 946
ENSMUST00000115662 Pcdha10-209 protein_coding Mus_musculus 0 924
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 891
ENSMUST00000115658 Pcdha10-206 protein_coding Mus_musculus 0 870

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