C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616558 SYTL1-009 ENSG00000142765 9606 + 1:27342041-27353893 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000616558
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000616558 0.096±0.00 0.878±0.00 0.362±0.16 0.297±0.00 0.177±0.00 6.513±0.00 2.701±0.11 4.864±2.22 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA:IDA exocytosis
GO:0017137 IEA Rab GTPase binding
GO:0019897 ISS extrinsic component of plasma membrane
GO:0042043 ISS neurexin family protein binding
GO:0042470 ISS melanosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030674 Sytl1-001 protein_coding Mus_musculus 0 1576
ENSMUST00000142039 Sytl1-002 processed_transcript Mus_musculus 0 728
ENSMUST00000105908 Sytl1-004 protein_coding Mus_musculus 0 553
ENSMUST00000154911 Sytl1-003 processed_transcript Mus_musculus 0 309

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