C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain containing preferred translocation partner in lipoma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617246 LPP-202 ENSG00000145012 9606 + 3:188225405-188890671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000617246
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000617246 10.757±0.00 4.998±0.00 0.761±0.04 4.322±2.59 6.663±0.00 2.741±0.00 84.366±0.00 2.756±0.00 4.000±2.61 4.587±0.00 5.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Y6 CIL_0003Y6_0002 CGP 3:187721377-188890671
CIL_00003W CIL_00003W_0001 CGP 3:188153284-189325304

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038053 Lpp-201 protein_coding Mus_musculus 0 2235
ENSMUST00000078988 Lpp-202 protein_coding Mus_musculus 0 2235
ENSMUST00000115314 Lpp-203 protein_coding Mus_musculus 0 1775
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000002 66

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