C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618834 PCDHA4-003 ENSG00000204967 9606 + 5:140807037-140817593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverLungMuscleOvaryPlacentaENST00000618834
Transcript ID Adipose Adrenal Breast Heart Liver Lung Muscle Ovary Placenta
ENST00000618834 0.109±0.00 0.295±0.00 0.272±0.00 0.074±0.02 0.068±0.00 0.482±0.29 0.009±0.00 0.330±0.00 0.197±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 2041
ENSMUST00000115658 Pcdha10-206 protein_coding Mus_musculus 0 1469
ENSMUST00000047614 Pcdha10-203 protein_coding Mus_musculus 0 1014
ENSMUST00000070797 Pcdha10-204 protein_coding Mus_musculus 0 981
ENSMUST00000115662 Pcdha10-209 protein_coding Mus_musculus 0 966
ENSMUST00000115659 Pcdha10-207 protein_coding Mus_musculus 0 950
ENSMUST00000115657 Pcdha10-205 protein_coding Mus_musculus 0 891

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