C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000623936 RPL41-203 ENSG00000279483 9606 + 7:137513832-137514238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverLungMuscleOvaryTestisENST00000623936
Transcript ID Adipose Adrenal Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000623936 0.045±0.00 0.284±0.00 0.180±0.00 0.177±0.00 0.183±0.00 0.046±0.00 0.874±0.00 1.044±0.26 0.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q6 CIL_0002Q6_0001 CGP 7:137227341-137847092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073238 Gm10076-201 protein_coding Mus_musculus 2e-31 139
ENSMUST00000176010 Rpl41-001 protein_coding Mus_musculus 2e-30 135
ENSMUST00000176683 Rpl41-003 protein_coding Mus_musculus 2e-30 135
ENSMUST00000177163 Rpl41-002 protein_coding Mus_musculus 2e-30 135
ENSMUST00000086236 Gm10180-201 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000179668 Gm10736-201 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000178135 Gm3699-201 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000176184 Rpl41-004 retained_intron Mus_musculus 1e-22 110
ENSMUST00000177513 Rpl41-006 retained_intron Mus_musculus 1e-22 110
ENSMUST00000176906 Rpl41-007 protein_coding Mus_musculus 0.0000000000001 81

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