C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22 (organic cation/ergothioneine transporter), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000005335 slc22a4 7955 + 21:44228126-44233848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000024342 slc22a4-001 44228126-44233848 protein_coding
  ENSDART00000138828 slc22a4-003 44228385-44230008 retained_intron
  ENSDART00000145081 slc22a4-002 44228321-44230105 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000024342ENSDART00000145081
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000024342 0.234±0.00 0.177±0.14 1.393±0.00 0.022±0.00 0.845±0.00
ENSDART00000145081 0.088±0.00 N/A 10.598±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HR CIL_0000HR_0001 CGP 21:44228126-44244536

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001887 IDA selenium compound metabolic process
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0015698 IMP inorganic anion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0022857 IEA transmembrane transporter activity
GO:0050787 IDA detoxification of mercury ion
GO:0051597 IMP response to methylmercury
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000197208 SLC22A4 solute carrier family 22 (organic cation/zwitterion transporter), member 4 protein_coding Homo_sapiens
ENSG00000197375 SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein_coding Homo_sapiens
ENSMUSG00000018900 Slc22a5 solute carrier family 22 (organic cation transporter), member 5 protein_coding Mus_musculus
ENSMUSG00000020334 Slc22a4 solute carrier family 22 (organic cation transporter), member 4 protein_coding Mus_musculus
ENSMUSG00000063652 Slc22a21 solute carrier family 22 (organic cation transporter), member 21 protein_coding Mus_musculus

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