C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22 (organic cation transporter), member 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063652 Slc22a21 10090 - 11:53949965-53980332 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076493 Slc22a21-001 53949965-53980332 protein_coding
  ENSMUST00000124221 Slc22a21-003 53957974-53979870 nonsense_mediated_decay
  ENSMUST00000129301 Slc22a21-002 53950563-53953146 processed_transcript
  ENSMUST00000143352 Slc22a21-004 53958066-53969603 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076493ENSMUST00000124221ENSMUST00000129301ENSMUST00000143352
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076493 0.538±0.14 1.082±0.45 4.871±0.15 0.427±0.25 0.401±0.00 1.960±1.26 0.180±0.04 1.020±0.14 0.631±0.45 0.529±0.35 0.117±0.05 1.117±0.72 0.915±0.50 27.827±13.24
ENSMUST00000124221 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.01 N/A 0.120±0.00 0.557±0.00 0.901±0.08 4.816±0.00
ENSMUST00000129301 N/A N/A 3.282±0.46 0.244±0.00 0.873±0.00 N/A N/A N/A 0.897±0.26 N/A 0.224±0.08 1.038±0.10 0.867±0.23 4.482±0.00
ENSMUST00000143352 N/A N/A N/A N/A N/A N/A 0.230±0.04 1.100±0.23 N/A 1.042±0.36 N/A 0.748±0.00 0.871±0.12 5.411±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332
CIL_0000HR CIL_0000HR_0004 CGP 11:53949965-54028090

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005777 IDA peroxisome
GO:0015226 IDA carnitine transmembrane transporter activity
GO:0015879 IDA carnitine transport
GO:0016021 IEA integral component of membrane
GO:0031231 IDA intrinsic component of peroxisomal membrane
GO:1902603 IDA carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005335 slc22a4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 protein_coding Danio_rerio
ENSDARG00000068603 slc22a5 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein_coding Danio_rerio
ENSDARG00000094112 slc22a21 solute carrier family 22 (organic cation transporter), member 21 protein_coding Danio_rerio
ENSG00000197375 SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein_coding Homo_sapiens

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