C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22 (organic cation transporter), member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018900 Slc22a5 10090 - 11:53864542-53891660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019044 Slc22a5-001 53864542-53891660 protein_coding
  ENSMUST00000136307 Slc22a5-002 53873679-53891595 nonsense_mediated_decay
  ENSMUST00000152084 Slc22a5-003 53865465-53871677 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019044ENSMUST00000136307ENSMUST00000152084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019044 6.813±1.67 19.922±5.95 13.891±0.27 4.662±0.86 8.823±3.03 10.242±2.36 6.618±1.45 73.318±10.81 4.006±2.78 8.558±0.73 2.124±0.85 11.826±5.78 24.252±11.41 7.540±3.88
ENSMUST00000136307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.974±0.00
ENSMUST00000152084 N/A N/A N/A 1.498±0.00 N/A N/A N/A N/A N/A N/A N/A 3.648±0.00 16.777±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006814 IEA sodium ion transport
GO:0007005 IMP mitochondrion organization
GO:0007512 IMP adult heart development
GO:0007626 IMP locomotory behavior
GO:0009437 IMP carnitine metabolic process
GO:0015226 IMP carnitine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015651 IDA quaternary ammonium group transmembrane transporter activity
GO:0015697 IDA quaternary ammonium group transport
GO:0015879 IMP carnitine transport
GO:0016020 IC membrane
GO:0016021 IEA integral component of membrane
GO:0031526 IDA brush border membrane
GO:0048608 IMP reproductive structure development
GO:1902603 IMP carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005335 slc22a4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 protein_coding Danio_rerio
ENSDARG00000068603 slc22a5 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein_coding Danio_rerio
ENSDARG00000094112 slc22a21 solute carrier family 22 (organic cation transporter), member 21 protein_coding Danio_rerio
ENSG00000197375 SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein_coding Homo_sapiens

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