C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000012244 ube2e3 7955 + 9:44870945-44953369 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000020550 ube2e3-001 44870945-44953369 protein_coding
  ENSDART00000136628 ube2e3-002 44871186-44874507 retained_intron
  ENSDART00000138549 ube2e3-003 44873919-44952835 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000020550ENSDART00000138549
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000020550 55.070±12.99 76.297±40.79 45.274±18.87 1.756±0.00 14.841±0.00
ENSDART00000138549 31.713±2.45 61.468±5.43 10.649±0.00 0.987±0.00 8.347±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0001 CGP 9:44625558-44953369
CIL_0004BZ CIL_0004BZ_0001 CGP 9:44870945-45154224

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0016874 IEA ligase activity
GO:0016881 IEA acid-amino acid ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000170035 UBE2E3 ubiquitin-conjugating enzyme E2E 3 protein_coding Homo_sapiens
ENSMUSG00000027011 Ube2e3 ubiquitin-conjugating enzyme E2E 3 protein_coding Mus_musculus

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