C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000020550 ube2e3-001 ENSDARG00000012244 7955 + 9:44870945-44953369 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000020550
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000020550 55.070±12.99 76.297±40.79 45.274±18.87 1.756±0.00 14.841±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0001 CGP 9:44625558-44953369
CIL_0004BZ CIL_0004BZ_0001 CGP 9:44870945-45154224

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0016874 IEA ligase activity
GO:0016881 IEA acid-amino acid ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028398 Ube2e3-001 protein_coding Mus_musculus 0 497
ENSMUST00000121433 Ube2e3-007 protein_coding Mus_musculus 0 497
ENSMUST00000153266 Ube2e3-005 retained_intron Mus_musculus 0 248
ENST00000392415 UBE2E3-201 protein_coding Homo_sapiens 0 492
ENST00000410062 UBE2E3-001 protein_coding Homo_sapiens 0 492
ENST00000602291 UBE2E3-012 protein_coding Homo_sapiens 0 444
ENST00000602303 UBE2E3-007 protein_coding Homo_sapiens 0 370
ENST00000602479 UBE2E3-004 protein_coding Homo_sapiens 0 370
ENST00000602710 UBE2E3-002 protein_coding Homo_sapiens 0 492
ENST00000602837 UBE2E3-013 processed_transcript Homo_sapiens 0 348
ENST00000602888 UBE2E3-011 retained_intron Homo_sapiens 0 387
ENST00000602959 UBE2E3-003 protein_coding Homo_sapiens 0 492
ENST00000602970 UBE2E3-009 processed_transcript Homo_sapiens 1e-19 100

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