C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2E 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170035 UBE2E3 9606 + 2:180967248-181076585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392415 UBE2E3-201 180980385-181063424 protein_coding
  ENST00000410062 UBE2E3-001 180980606-181063441 protein_coding
  ENST00000602291 UBE2E3-012 180980391-181062849 protein_coding
  ENST00000602303 UBE2E3-007 180967248-181060812 protein_coding
  ENST00000602475 UBE2E3-005 180980807-180990046 protein_coding
  ENST00000602479 UBE2E3-004 180980376-181060810 protein_coding
  ENST00000602499 UBE2E3-006 180981036-181057816 protein_coding
  ENST00000602632 UBE2E3-008 180982023-180990005 protein_coding
  ENST00000602710 UBE2E3-002 180981124-181063441 protein_coding
  ENST00000602762 UBE2E3-010 180982018-181076232 processed_transcript
  ENST00000602837 UBE2E3-013 181057691-181076478 processed_transcript
  ENST00000602888 UBE2E3-011 180984006-181062920 retained_intron
  ENST00000602959 UBE2E3-003 180980373-181063029 protein_coding
  ENST00000602970 UBE2E3-009 181062890-181076585 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392415ENST00000410062ENST00000602710ENST00000602888ENST00000602959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392415 5.449±0.00 11.454±0.00 1.404±0.00 16.991±0.00 5.812±3.98 8.659±0.00 4.315±0.00 18.749±0.00 2.653±0.00 3.819±0.00 6.181±0.00 16.465±7.30 16.679±0.73 28.001±0.00
ENST00000410062 13.831±0.00 5.926±0.00 N/A 12.933±3.32 9.466±8.01 7.352±4.52 7.078±5.68 7.493±4.85 6.183±3.20 13.853±0.00 15.126±2.12 8.563±3.29 6.824±0.75 19.041±1.69
ENST00000602710 N/A N/A N/A N/A N/A 1.186±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602888 N/A N/A 8.194±0.00 16.343±0.00 5.501±0.00 N/A 2.162±0.00 N/A 2.805±0.00 2.806±0.00 N/A 18.672±12.68 24.604±0.00 59.601±0.00
ENST00000602959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.744±0.00 24.750±0.00 23.914±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0002 CGP 2:179944876-181076585
CIL_0004BZ CIL_0004BZ_0002 CGP 2:180967248-181536187

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity
GO:0040008 IEA regulation of growth
GO:0070534 IDA protein K63-linked ubiquitination
GO:0070936 IDA protein K48-linked ubiquitination
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012244 ube2e3 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) protein_coding Danio_rerio
ENSMUSG00000027011 Ube2e3 ubiquitin-conjugating enzyme E2E 3 protein_coding Mus_musculus

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