C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0004BZ_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000012244-ENSDARG00000061186 | CGP | 7955 | 9:44870945-45154224  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000012244  (ube2e3)ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) |
ENSDART00000020550 (ube2e3-001)
|
44870945-44953369 | protein_coding | |
|
ENSDART00000136628 (ube2e3-002)
|
44871186-44874507 | retained_intron | ||
|
ENSDART00000138549 (ube2e3-003)
|
44873919-44952835 | retained_intron | ||
|
ENSDARG00000061186 (itga4) integrin alpha 4 |
ENSDART00000086963 (itga4-201)
|
45108199-45154224 | protein_coding | |
|
ENSDART00000149577 (itga4-001)
|
45108068-45153578 | protein_coding | ||
| CIL_0004BZ_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000170035-ENSG00000115232 | CGP | 9606 | 2:180967248-181536187 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000115232 (ITGA4) integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) |
ENST00000233573 (ITGA4-006)
|
181457428-181509805 | protein_coding | |
|
ENST00000339307 (ITGA4-003)
|
181457207-181476218 | protein_coding | ||
|
ENST00000397033 (ITGA4-001)
|
181457225-181536187 | protein_coding | ||
|
ENST00000465522 (ITGA4-004)
|
181457404-181486309 | retained_intron | ||
|
ENST00000468948 (ITGA4-011)
|
181523335-181524365 | retained_intron | ||
|
ENST00000473002 (ITGA4-010)
|
181493034-181495832 | retained_intron | ||
|
ENST00000476089 (ITGA4-002)
|
181457202-181459391 | retained_intron | ||
|
ENST00000476824 (ITGA4-008)
|
181498572-181527450 | retained_intron | ||
|
ENST00000478440 (ITGA4-005)
|
181458241-181479716 | processed_transcript | ||
|
ENST00000484404 (ITGA4-007)
|
181457713-181475290 | retained_intron | ||
|
ENST00000490435 (ITGA4-009)
|
181498281-181511771 | retained_intron | ||
|
ENST00000614742 (ITGA4-201)
|
181457225-181535562 | protein_coding | ||
|
ENSG00000170035 (UBE2E3) ubiquitin-conjugating enzyme E2E 3 |
ENST00000392415 (UBE2E3-201)
|
180980385-181063424 | protein_coding | |
|
ENST00000410062 (UBE2E3-001)
|
180980606-181063441 | protein_coding | ||
|
ENST00000602291 (UBE2E3-012)
|
180980391-181062849 | protein_coding | ||
|
ENST00000602303 (UBE2E3-007)
|
180967248-181060812 | protein_coding | ||
|
ENST00000602475 (UBE2E3-005)
|
180980807-180990046 | protein_coding | ||
|
ENST00000602479 (UBE2E3-004)
|
180980376-181060810 | protein_coding | ||
|
ENST00000602499 (UBE2E3-006)
|
180981036-181057816 | protein_coding | ||
|
ENST00000602632 (UBE2E3-008)
|
180982023-180990005 | protein_coding | ||
|
ENST00000602710 (UBE2E3-002)
|
180981124-181063441 | protein_coding | ||
|
ENST00000602762 (UBE2E3-010)
|
180982018-181076232 | processed_transcript | ||
|
ENST00000602837 (UBE2E3-013)
|
181057691-181076478 | processed_transcript | ||
|
ENST00000602888 (UBE2E3-011)
|
180984006-181062920 | retained_intron | ||
|
ENST00000602959 (UBE2E3-003)
|
180980373-181063029 | protein_coding | ||
|
ENST00000602970 (UBE2E3-009)
|
181062890-181076585 | processed_transcript | ||
|
ENSG00000226681 (AC020595.1) |
ENST00000456446 (AC020595.1-001)
|
181422154-181425749 | lincRNA | |
|
ENSG00000234663 (AC104820.2) |
ENST00000414750 (AC104820.2-003)
|
181101932-181192053 | lincRNA | |
|
ENST00000424170 (AC104820.2-002)
|
181123835-181339776 | lincRNA | ||
|
ENST00000424655 (AC104820.2-005)
|
181123942-181342311 | lincRNA | ||
|
ENST00000428474 (AC104820.2-004)
|
181123896-181362911 | lincRNA | ||
|
ENST00000435411 (AC104820.2-001)
|
181123837-181399559 | lincRNA | ||
|
ENSG00000236153 (AC104076.3) |
ENST00000428080 (AC104076.3-001)
|
180979427-180980090 | antisense | |
| CIL_0004BZ_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000027011-ENSMUSG00000027009 | CGP | 10090 | 2:78868124-79333123 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000027009 (Itga4) integrin alpha 4 |
ENSMUST00000099972 (Itga4-001)
|
79255500-79333123 | protein_coding | |
|
ENSMUST00000126312 (Itga4-005)
|
79255947-79292977 | processed_transcript | ||
|
ENSMUST00000135919 (Itga4-004)
|
79255721-79293273 | processed_transcript | ||
|
ENSMUST00000141094 (Itga4-003)
|
79255572-79273986 | processed_transcript | ||
|
ENSMUST00000155105 (Itga4-002)
|
79255426-79257852 | processed_transcript | ||
|
ENSMUSG00000027011 (Ube2e3) ubiquitin-conjugating enzyme E2E 3 |
ENSMUST00000028398 (Ube2e3-001)
|
78869047-78921293 | protein_coding | |
|
ENSMUST00000121433 (Ube2e3-007)
|
78869678-78920297 | protein_coding | ||
|
ENSMUST00000124120 (Ube2e3-006)
|
78868124-78870607 | protein_coding | ||
|
ENSMUST00000130914 (Ube2e3-004)
|
78868238-78913739 | protein_coding | ||
|
ENSMUST00000138864 (Ube2e3-003)
|
78869334-78872759 | retained_intron | ||
|
ENSMUST00000153266 (Ube2e3-005)
|
78918393-78920052 | retained_intron | ||
|
ENSMUST00000153614 (Ube2e3-002)
|
78869240-78914551 | retained_intron | ||
|
ENSMUSG00000075256 (Cerkl) ceramide kinase-like |
ENSMUST00000099974 (Cerkl-002)
|
79331752-79428954 | processed_transcript | |
|
ENSMUST00000123859 (Cerkl-004)
|
79332595-79428997 | processed_transcript | ||
|
ENSMUST00000130499 (Cerkl-009)
|
79354788-79370890 | processed_transcript | ||
|
ENSMUST00000143602 (Cerkl-003)
|
79332593-79428907 | processed_transcript | ||
|
ENSMUST00000143974 (Cerkl-001)
|
79332530-79428891 | protein_coding | ||
|
ENSMUST00000145766 (Cerkl-007)
|
79387516-79391139 | processed_transcript | ||
|
ENSMUST00000147402 (Cerkl-011)
|
79332502-79333682 | processed_transcript | ||
|
ENSMUST00000152413 (Cerkl-006)
|
79388848-79393034 | processed_transcript | ||
|
ENSMUST00000152549 (Cerkl-005)
|
79332593-79428891 | processed_transcript | ||
|
ENSMUST00000153602 (Cerkl-012)
|
79338569-79456785 | processed_transcript | ||
|
ENSMUST00000156731 (Cerkl-010)
|
79330543-79338603 | protein_coding | ||
|
ENSMUST00000156830 (Cerkl-008)
|
79343233-79370865 | processed_transcript | ||
Expression Patterns
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