C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2E 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027011 Ube2e3 10090 + 2:78868124-78921293 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028398 Ube2e3-001 78869047-78921293 protein_coding
  ENSMUST00000121433 Ube2e3-007 78869678-78920297 protein_coding
  ENSMUST00000124120 Ube2e3-006 78868124-78870607 protein_coding
  ENSMUST00000130914 Ube2e3-004 78868238-78913739 protein_coding
  ENSMUST00000138864 Ube2e3-003 78869334-78872759 retained_intron
  ENSMUST00000153266 Ube2e3-005 78918393-78920052 retained_intron
  ENSMUST00000153614 Ube2e3-002 78869240-78914551 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028398ENSMUST00000121433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028398 11.453±4.68 66.251±23.85 11.745±0.99 35.539±21.54 21.202±15.04 25.151±2.75 7.433±1.82 17.638±4.70 20.847±10.39 25.695±7.25 4.590±0.71 40.083±18.90 17.554±4.98 5.233±2.09
ENSMUST00000121433 5.365±1.79 N/A 3.433±0.00 19.664±0.00 8.345±5.89 N/A 4.602±0.65 3.378±0.00 N/A N/A 5.199±0.48 16.719±3.07 21.372±4.49 5.178±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0003 CGP 2:77881159-78921293
CIL_0004BZ CIL_0004BZ_0003 CGP 2:78868124-79333123

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0016881 IEA acid-amino acid ligase activity
GO:0040008 IEA regulation of growth
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012244 ube2e3 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) protein_coding Danio_rerio
ENSG00000170035 UBE2E3 ubiquitin-conjugating enzyme E2E 3 protein_coding Homo_sapiens

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