C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly A binding protein, cytoplasmic 1 a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000017219 pabpc1a 7955 + 16:58353403-58375366 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000024729 pabpc1a-001 58353412-58375366 protein_coding
  ENSDART00000148392 pabpc1a-002 58353693-58375147 protein_coding
  ENSDART00000149119 pabpc1a-005 58357065-58360241 processed_transcript
  ENSDART00000149264 pabpc1a-003 58353403-58356288 processed_transcript
  ENSDART00000149449 pabpc1a-006 58353854-58363839 processed_transcript
  ENSDART00000149603 pabpc1a-004 58353685-58365040 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000024729ENSDART00000148392
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000024729 42.438±10.50 98.857±0.00 247.674±109.35 N/A N/A
ENSDART00000148392 131.860±13.63 362.479±141.86 61.026±0.00 130.148±0.00 91.942±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0007507 IMP heart development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000070756 PABPC1 poly(A) binding protein, cytoplasmic 1 protein_coding Homo_sapiens
ENSG00000151846 PABPC3 poly(A) binding protein, cytoplasmic 3 protein_coding Homo_sapiens
ENSMUSG00000022283 Pabpc1 poly(A) binding protein, cytoplasmic 1 protein_coding Mus_musculus
ENSMUSG00000046173 Pabpc6 poly(A) binding protein, cytoplasmic 6 protein_coding Mus_musculus
ENSMUSG00000051732 Pabpc2 poly(A) binding protein, cytoplasmic 2 protein_coding Mus_musculus

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