C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022283 Pabpc1 10090 - 15:36595661-36608973 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001809 Pabpc1-001 36595661-36608973 protein_coding
  ENSMUST00000142357 Pabpc1-005 36596024-36597426 processed_transcript
  ENSMUST00000146327 Pabpc1-002 36603496-36608973 processed_transcript
  ENSMUST00000146577 Pabpc1-003 36596024-36598312 processed_transcript
  ENSMUST00000147116 Pabpc1-004 36596201-36597736 processed_transcript
  ENSMUST00000155116 Pabpc1-007 36595907-36598019 protein_coding
  ENSMUST00000156793 Pabpc1-006 36598301-36602346 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001809ENSMUST00000156793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001809 59.714±31.59 45.678±22.28 65.448±17.59 44.343±35.53 90.716±57.23 90.350±49.61 19.888±14.87 29.733±18.32 70.885±66.39 45.749±14.15 20.550±1.72 118.968±134.31 249.371±273.95 404.016±434.23
ENSMUST00000156793 N/A N/A N/A 61.778±0.00 N/A N/A N/A N/A N/A N/A N/A 302.364±245.13 389.553±301.52 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 ISS poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0030529 ISS ribonucleoprotein complex
GO:0031047 IMP gene silencing by RNA
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000623 ISS negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017219 pabpc1a poly A binding protein, cytoplasmic 1 a protein_coding Danio_rerio
ENSDARG00000021140 pabpc1b poly A binding protein, cytoplasmic 1 b protein_coding Danio_rerio

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