C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly A binding protein, cytoplasmic 1 a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148392 pabpc1a-002 ENSDARG00000017219 7955 + 16:58353693-58375147 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000148392
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000148392 131.860±13.63 362.479±141.86 61.026±0.00 130.148±0.00 91.942±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0007507 IMP heart development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063219 Pabpc2-001 protein_coding Mus_musculus 0 523
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000120647 Gm11839-001 processed_pseudogene Mus_musculus 0 617
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 621
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 621
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 621
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 621
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 414
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 292

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