C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000017843 srsf1b 7955 - 21:38403758-38412580 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000110646 srsf1b-201 38403760-38412580 protein_coding
  ENSDART00000140865 srsf1b-002 38405122-38412575 protein_coding
  ENSDART00000143566 srsf1b-001 38403758-38412563 protein_coding
  ENSDART00000151683 srsf1b-003 38403758-38412580 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000110646ENSDART00000140865ENSDART00000143566ENSDART00000151683
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000110646 N/A 8.384±0.00 3.761±0.00 N/A N/A
ENSDART00000140865 30.040±6.16 19.479±2.03 3.046±0.00 2.840±0.00 5.901±0.00
ENSDART00000143566 23.310±13.87 8.927±2.02 N/A 2.132±0.00 N/A
ENSDART00000151683 10.791±1.63 6.526±0.00 3.846±0.00 0.709±0.00 3.583±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039M CIL_00039M_0001 CGP 21:38392296-38412580

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136450 SRSF1 serine/arginine-rich splicing factor 1 protein_coding Homo_sapiens
ENSMUSG00000018379 Srsf1 serine/arginine-rich splicing factor 1 protein_coding Mus_musculus

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