C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00039M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005172-ENSDARG00000017843 CGP 7955 21:38392296-38412580
GeneTranscriptPositionBiotype
ENSDARG00000005172 (dynll2b)
dynein, light chain, LC8-type 2b
ENSDART00000020174 (dynll2b-001) 38392296-38401717 protein_coding
ENSDARG00000017843 (srsf1b)
serine/arginine-rich splicing factor 1b
ENSDART00000110646 (srsf1b-201) 38403760-38412580 protein_coding
ENSDART00000140865 (srsf1b-002) 38405122-38412575 protein_coding
ENSDART00000143566 (srsf1b-001) 38403758-38412563 protein_coding
ENSDART00000151683 (srsf1b-003) 38403758-38412580 nonsense_mediated_decay
CIL_00039M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020483-ENSMUSG00000018379 CGP 10090 11:87979525-88053755
GeneTranscriptPositionBiotype
ENSMUSG00000018379 (Srsf1)
serine/arginine-rich splicing factor 1
ENSMUST00000079866 (Srsf1-003) 88047718-88051490 protein_coding
ENSMUST00000107920 (Srsf1-006) 88047803-88050410 protein_coding
ENSMUST00000132983 (Srsf1-004) 88049412-88051051 retained_intron
ENSMUST00000134824 (Srsf1-002) 88048567-88051472 nonsense_mediated_decay
ENSMUST00000139129 (Srsf1-001) 88047373-88053755 protein_coding
ENSMUST00000171976 (Srsf1-007) 88047725-88048826 retained_intron
ENSMUST00000172186 (Srsf1-005) 88048589-88051122 nonsense_mediated_decay
ENSMUSG00000020483 (Dynll2)
dynein light chain LC8-type 2
ENSMUST00000020775 (Dynll2-001) 87979525-87987533 protein_coding
ENSMUST00000107923 (Dynll2-201) 87979525-87986585 protein_coding
ENSMUST00000146941 (Dynll2-002) 87980155-87987356 nonsense_mediated_decay
ENSMUST00000178105 (Dynll2-202) 87979525-87984012 protein_coding
ENSMUSG00000096983 (2010015M23Rik)
RIKEN cDNA 2010015M23 gene
ENSMUST00000181900 (2010015M23Rik-201) 88039578-88047360 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039M_0001ENSDARG00000005172ENSDART00000020174ENSDARG00000017843ENSDART00000110646ENSDART00000140865ENSDART00000143566ENSDART00000151683CIL_00039M_0002ENSMUSG00000018379ENSMUST00000079866ENSMUST00000107920ENSMUST00000132983ENSMUST00000134824ENSMUST00000139129ENSMUST00000171976ENSMUST00000172186ENSMUSG00000020483ENSMUST00000020775ENSMUST00000107923ENSMUST00000146941ENSMUST00000178105ENSMUSG00000096983ENSMUST00000181900
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039M_0001ENSDARG00000005172ENSDART00000020174ENSDARG00000017843ENSDART00000110646ENSDART00000140865ENSDART00000143566ENSDART00000151683CIL_00039M_0002ENSMUSG00000018379ENSMUST00000079866ENSMUST00000107920ENSMUST00000132983ENSMUST00000134824ENSMUST00000139129ENSMUST00000171976ENSMUST00000172186ENSMUSG00000020483ENSMUST00000020775ENSMUST00000146941ENSMUST00000178105ENSMUSG00000096983ENSMUST00000181900
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005172 ENSDART00000020174 N/A N/A N/A 54.688±21.48 N/A N/A 11.384±7.72 24.670±21.93 0.956±0.00 N/A 18.019±0.00 N/A N/A N/A
ENSDARG00000017843 ENSDART00000110646 N/A N/A N/A N/A N/A N/A 8.384±0.00 3.761±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000140865 N/A N/A N/A 30.040±6.16 N/A N/A 19.479±2.03 3.046±0.00 2.840±0.00 N/A 5.901±0.00 N/A N/A N/A
ENSDART00000143566 N/A N/A N/A 23.310±13.87 N/A N/A 8.927±2.02 N/A 2.132±0.00 N/A N/A N/A N/A N/A
ENSDART00000151683 N/A N/A N/A 10.791±1.63 N/A N/A 6.526±0.00 3.846±0.00 0.709±0.00 N/A 3.583±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018379 ENSMUST00000079866 22.797±6.55 58.028±25.89 44.159±9.07 49.398±36.47 18.417±6.74 15.293±3.87 10.141±1.52 11.240±1.83 37.323±29.49 20.259±1.45 11.090±1.26 27.151±15.49 29.947±14.88 17.700±1.65
ENSMUST00000107920 25.780±0.00 N/A N/A N/A 14.190±1.04 23.324±5.67 9.133±1.69 17.483±0.94 28.416±26.77 15.735±0.66 N/A 35.203±4.89 54.556±21.53 27.293±1.20
ENSMUST00000132983 N/A N/A 88.764±0.00 95.184±56.29 20.353±0.00 N/A 10.272±0.32 N/A N/A N/A N/A 69.810±16.66 68.030±43.44 38.859±15.05
ENSMUST00000134824 N/A N/A N/A 59.649±0.00 N/A N/A N/A N/A N/A N/A N/A 93.502±39.96 86.919±42.31 67.890±0.00
ENSMUST00000139129 6.906±3.39 19.528±0.00 16.543±2.23 26.182±16.94 3.523±0.74 6.998±3.13 3.593±0.67 4.389±1.14 17.786±13.28 5.936±0.10 5.012±1.75 12.456±5.79 10.781±5.77 6.057±0.90
ENSMUST00000171976 36.972±12.30 97.327±47.95 N/A N/A 38.244±11.80 21.210±5.12 N/A 18.387±1.98 7.698±1.16 20.752±0.00 N/A 34.142±9.30 N/A N/A
ENSMUST00000172186 N/A N/A N/A 144.207±0.00 N/A N/A N/A N/A N/A N/A N/A 379.824±0.00 310.035±183.09 228.710±0.00
ENSMUSG00000020483 ENSMUST00000020775 76.155±10.96 83.447±34.20 59.820±2.52 106.190±24.53 45.497±15.33 44.938±13.50 138.742±5.96 99.699±8.53 55.521±30.20 70.331±2.94 70.989±7.77 66.346±8.99 46.724±19.57 80.058±11.21
ENSMUST00000107923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146941 N/A N/A N/A 179.252±0.00 N/A N/A N/A N/A N/A N/A N/A 65.863±0.00 66.115±31.00 12.924±0.00
ENSMUST00000178105 N/A N/A N/A 117.985±0.00 18.866±0.00 N/A N/A N/A N/A N/A 41.034±8.34 59.842±8.08 49.030±15.79 N/A
ENSMUSG00000096983 ENSMUST00000181900 0.162±0.00 0.172±0.06 0.843±0.21 0.941±0.51 0.199±0.10 0.087±0.00 0.192±0.00 0.271±0.01 0.676±0.41 0.094±0.00 0.580±0.05 0.580±0.18 0.207±0.11 1.111±0.54

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