C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000140865 srsf1b-002 ENSDARG00000017843 7955 - 21:38405122-38412575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000140865
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000140865 30.040±6.16 19.479±2.03 3.046±0.00 2.840±0.00 5.901±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039M CIL_00039M_0001 CGP 21:38392296-38412580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258962 SRSF1-001 protein_coding Homo_sapiens 0 375
ENST00000581979 SRSF1-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000582730 SRSF1-003 protein_coding Homo_sapiens 0 383
ENST00000583741 SRSF1-005 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000584668 SRSF1-008 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000584773 SRSF1-002 protein_coding Homo_sapiens 0 375

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