C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000151683 srsf1b-003 ENSDARG00000017843 7955 - 21:38403758-38412580 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000151683
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000151683 10.791±1.63 6.526±0.00 3.846±0.00 0.709±0.00 3.583±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039M CIL_00039M_0001 CGP 21:38392296-38412580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258962 SRSF1-001 protein_coding Homo_sapiens 0 455
ENST00000581979 SRSF1-004 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000582730 SRSF1-003 protein_coding Homo_sapiens 0 375
ENST00000583741 SRSF1-005 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000584668 SRSF1-008 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000584773 SRSF1-002 protein_coding Homo_sapiens 0 453

Loading