C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: brain-derived neurotrophic factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000018817 bdnf 7955 - 7:33259493-33276180 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000014843 bdnf-001 33259493-33267233 protein_coding
  ENSDART00000075389 bdnf-002 33260362-33276180 protein_coding
  ENSDART00000131009 bdnf-005 33260021-33275100 protein_coding
  ENSDART00000132353 bdnf-004 33260585-33273448 protein_coding
  ENSDART00000144682 bdnf-003 33260625-33275840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000014843ENSDART00000131009ENSDART00000132353
Transcript ID Brain Heart Kidney Muscle
ENSDART00000014843 13.367±4.93 0.366±0.20 0.167±0.00 0.596±0.00
ENSDART00000131009 8.968±0.00 N/A 2.734±0.00 0.409±0.00
ENSDART00000132353 N/A N/A N/A 0.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078E CIL_00078E_0001 CGP 7:33236844-33276180
CIL_0004RP CIL_0004RP_0001 CGP 7:33259493-33356363

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005575 ND cellular_component
GO:0007420 IEP brain development
GO:0008083 IEA growth factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000176697 BDNF brain-derived neurotrophic factor protein_coding Homo_sapiens
ENSMUSG00000048482 Bdnf brain derived neurotrophic factor protein_coding Mus_musculus

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