C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000018817-ENSDARG00000008022 CGP 7955 7:33259493-33356363
GeneTranscriptPositionBiotype
ENSDARG00000008022 (kif18a)
kinesin family member 18A 		ENSDART00000023568 (kif18a-001) 33311274-33355368 protein_coding
ENSDART00000134521 (kif18a-002) 33352428-33356363 protein_coding
ENSDARG00000018817 (bdnf)
brain-derived neurotrophic factor 		ENSDART00000014843 (bdnf-001) 33259493-33267233 protein_coding
ENSDART00000075389 (bdnf-002) 33260362-33276180 protein_coding
ENSDART00000131009 (bdnf-005) 33260021-33275100 protein_coding
ENSDART00000132353 (bdnf-004) 33260585-33273448 protein_coding
ENSDART00000144682 (bdnf-003) 33260625-33275840 protein_coding
CIL_0004RP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176697-ENSG00000121621 CGP 9606 11:27654893-28108308
GeneTranscriptPositionBiotype
ENSG00000121621 (KIF18A)
kinesin family member 18A 		ENST00000263181 (KIF18A-001) 28020620-28108308 protein_coding
ENST00000526288 (KIF18A-002) 28097332-28108145 retained_intron
ENST00000531047 (KIF18A-004) 28084274-28088580 retained_intron
ENST00000533466 (KIF18A-003) 28076482-28097887 retained_intron
ENSG00000169519 (METTL15)
methyltransferase like 15 		ENST00000303459 (METTL15-002) 28110312-28333507 protein_coding
ENST00000403099 (METTL15-006) 28108320-28125587 protein_coding
ENST00000406787 (METTL15-001) 28108248-28333507 protein_coding
ENST00000407364 (METTL15-003) 28108354-28333507 protein_coding
ENST00000437814 (METTL15-004) 28110315-28125866 nonsense_mediated_decay
ENST00000451385 (METTL15-005) 28108330-28332422 nonsense_mediated_decay
ENST00000468295 (METTL15-007) 28327581-28330629 retained_intron
ENSG00000177447 (CBX3P1)
chromobox homolog 3 pseudogene 1 		ENST00000325243 (CBX3P1-001) 27806443-27806996 processed_pseudogene
ENSG00000224411 (RP11-1033A18.1)
heat shock protein 90kDa alpha (cytosolic), class A member 2, pseudogene 		ENST00000530115 (RP11-1033A18.1-001) 27888838-27891033 processed_pseudogene
ENSG00000245573 (BDNF-AS)
BDNF antisense RNA 		ENST00000499008 (BDNF-AS-002) 27506852-27677807 antisense
ENST00000499568 (BDNF-AS-007) 27506852-27698174 antisense
ENST00000500662 (BDNF-AS-006) 27506852-27698174 antisense
ENST00000501176 (BDNF-AS-001) 27506852-27677807 antisense
ENST00000501663 (BDNF-AS-011) 27665260-27677807 antisense
ENST00000502161 (BDNF-AS-005) 27506852-27698174 antisense
ENST00000530313 (BDNF-AS-009) 27639889-27659649 antisense
ENST00000530686 (BDNF-AS-008) 27506838-27675978 antisense
ENST00000532965 (BDNF-AS-010) 27506849-27658333 antisense
ENSG00000255094 (RP11-406D1.2)
 ENST00000525309 (RP11-406D1.2-001) 27978669-28019575 lincRNA
ENSG00000255496 (RP11-587D21.4)
 ENST00000530663 (RP11-587D21.4-001) 27696312-27877648 sense_overlapping

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RP_0001ENSDARG00000008022ENSDART00000023568ENSDART00000134521ENSDARG00000018817ENSDART00000014843ENSDART00000075389ENSDART00000131009ENSDART00000132353ENSDART00000144682CIL_0004RP_0002ENSG00000121621ENST00000263181ENST00000526288ENST00000531047ENST00000533466ENSG00000169519ENST00000303459ENST00000403099ENST00000406787ENST00000407364ENST00000437814ENST00000451385ENST00000468295ENSG00000177447ENST00000325243ENSG00000224411ENST00000530115ENSG00000245573ENST00000499008ENST00000499568ENST00000500662ENST00000501176ENST00000501663ENST00000502161ENST00000530313ENST00000530686ENST00000532965ENSG00000255094ENST00000525309ENSG00000255496ENST00000530663
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RP_0001ENSDARG00000008022ENSDART00000023568ENSDARG00000018817ENSDART00000014843ENSDART00000131009ENSDART00000132353CIL_0004RP_0002ENSG00000121621ENST00000263181ENSG00000169519ENST00000303459ENST00000406787ENST00000407364ENST00000451385ENSG00000177447ENST00000325243ENSG00000224411ENST00000530115ENSG00000245573ENST00000499008ENST00000499568ENST00000500662ENST00000501176ENST00000501663ENST00000530686ENST00000532965ENSG00000255094ENST00000525309ENSG00000255496ENST00000530663
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008022 ENSDART00000023568 N/A N/A N/A 0.130±0.00 N/A N/A N/A 2.645±1.29 0.092±0.00 N/A 0.129±0.00 N/A N/A N/A
ENSDART00000134521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000018817 ENSDART00000014843 N/A N/A N/A 13.367±4.93 N/A N/A 0.366±0.20 0.167±0.00 N/A N/A 0.596±0.00 N/A N/A N/A
ENSDART00000075389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131009 N/A N/A N/A 8.968±0.00 N/A N/A N/A 2.734±0.00 N/A N/A 0.409±0.00 N/A N/A N/A
ENSDART00000132353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A
ENSDART00000144682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121621 ENST00000263181 N/A N/A N/A N/A 0.600±0.00 1.336±0.00 N/A N/A N/A 0.505±0.03 N/A 2.193±0.68 0.421±0.29 8.632±2.47
ENST00000526288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169519 ENST00000303459 N/A 0.551±0.00 N/A 0.515±0.00 0.816±0.14 0.632±0.00 0.616±0.00 N/A 0.693±0.00 N/A 0.395±0.02 1.052±0.41 0.406±0.00 N/A
ENST00000403099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406787 N/A N/A 1.136±0.00 1.516±0.00 N/A 1.436±0.15 0.230±0.00 2.620±0.00 1.407±0.00 2.368±0.00 N/A 0.823±0.26 0.769±0.10 1.310±0.00
ENST00000407364 1.321±0.00 0.697±0.00 0.725±0.00 0.753±0.00 0.461±0.00 1.122±0.00 1.182±0.34 1.035±0.42 N/A 1.184±0.00 0.993±0.00 1.027±0.44 0.471±0.14 N/A
ENST00000437814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451385 N/A N/A N/A N/A N/A N/A N/A N/A 0.963±0.00 N/A N/A N/A N/A N/A
ENST00000468295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177447 ENST00000325243 N/A 0.021±0.00 N/A N/A 0.019±0.00 0.036±0.00 0.018±0.00 N/A N/A N/A 0.018±0.00 N/A 0.020±0.00 0.057±0.00
ENSG00000224411 ENST00000530115 0.080±0.00 0.059±0.00 N/A 0.112±0.10 0.093±0.00 0.111±0.09 0.033±0.02 0.113±0.10 0.033±0.00 0.052±0.00 0.046±0.00 0.048±0.03 0.052±0.04 0.210±0.02
ENSG00000245573 ENST00000499008 N/A N/A 0.623±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.16
ENST00000499568 N/A N/A N/A 1.258±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000500662 N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000501176 N/A N/A N/A 1.666±0.00 0.246±0.00 N/A N/A N/A N/A 0.687±0.00 N/A 0.356±0.20 0.682±0.00 N/A
ENST00000501663 0.088±0.00 N/A N/A N/A 0.693±0.00 0.306±0.00 N/A 1.164±0.00 0.203±0.00 N/A N/A N/A N/A N/A
ENST00000502161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530686 N/A N/A N/A N/A 0.430±0.00 N/A 0.217±0.00 0.596±0.00 0.160±0.00 N/A 0.125±0.00 0.582±0.33 1.419±0.00 2.496±0.00
ENST00000532965 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255094 ENST00000525309 N/A 0.013±0.00 N/A 0.013±0.00 N/A 0.040±0.02 N/A N/A N/A 0.075±0.00 N/A 0.037±0.00 N/A 0.076±0.00
ENSG00000255496 ENST00000530663 N/A N/A N/A 0.274±0.00 N/A N/A 0.122±0.00 0.067±0.00 N/A N/A N/A N/A N/A N/A

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