C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain-derived neurotrophic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000131009 bdnf-005 ENSDARG00000018817 7955 - 7:33260021-33275100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000131009
Transcript ID Brain Kidney Muscle
ENSDART00000131009 8.968±0.00 2.734±0.00 0.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078E CIL_00078E_0001 CGP 7:33236844-33276180
CIL_0004RP CIL_0004RP_0001 CGP 7:33259493-33356363

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005575 ND cellular_component
GO:0007420 IEP brain development
GO:0008083 IEA growth factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053317 Bdnf-001 protein_coding Mus_musculus 0 470
ENSMUST00000111042 Bdnf-010 protein_coding Mus_musculus 0 470
ENSMUST00000111043 Bdnf-009 protein_coding Mus_musculus 0 470
ENSMUST00000111044 Bdnf-008 protein_coding Mus_musculus 0 470
ENSMUST00000111045 Bdnf-007 protein_coding Mus_musculus 0 470
ENSMUST00000111046 Bdnf-005 protein_coding Mus_musculus 0 470
ENSMUST00000111047 Bdnf-003 protein_coding Mus_musculus 0 470
ENSMUST00000111049 Bdnf-004 protein_coding Mus_musculus 0 470
ENSMUST00000111050 Bdnf-006 protein_coding Mus_musculus 0 470
ENSMUST00000111051 Bdnf-002 protein_coding Mus_musculus 0 470
ENSMUST00000176893 Bdnf-011 protein_coding Mus_musculus 0 470
ENST00000314915 BDNF-018 protein_coding Homo_sapiens 0 479
ENST00000356660 BDNF-010 protein_coding Homo_sapiens 0 479
ENST00000395978 BDNF-003 protein_coding Homo_sapiens 0 479
ENST00000395980 BDNF-201 protein_coding Homo_sapiens 0 479
ENST00000395981 BDNF-002 protein_coding Homo_sapiens 0 479
ENST00000395983 BDNF-007 protein_coding Homo_sapiens 0 479
ENST00000395986 BDNF-013 protein_coding Homo_sapiens 0 479
ENST00000418212 BDNF-011 protein_coding Homo_sapiens 0 479
ENST00000420794 BDNF-202 protein_coding Homo_sapiens 0 479
ENST00000438929 BDNF-008 protein_coding Homo_sapiens 0 479
ENST00000439476 BDNF-015 protein_coding Homo_sapiens 0 479
ENST00000525528 BDNF-016 protein_coding Homo_sapiens 0 479
ENST00000525950 BDNF-001 protein_coding Homo_sapiens 0 479
ENST00000530786 BDNF-006 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000530861 BDNF-009 protein_coding Homo_sapiens 0 479
ENST00000532997 BDNF-004 protein_coding Homo_sapiens 0 479
ENST00000533131 BDNF-014 protein_coding Homo_sapiens 0 479
ENST00000533246 BDNF-012 protein_coding Homo_sapiens 0 479
ENST00000584049 BDNF-005 processed_transcript Homo_sapiens 0 479

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