C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000040184 syncrip 7955 + 20:2760603-2774552 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000058779 syncrip-001 2760603-2771764 protein_coding
  ENSDART00000129870 syncrip-201 2760607-2771761 protein_coding
  ENSDART00000132186 syncrip-002 2760657-2768361 protein_coding
  ENSDART00000133881 syncrip-003 2767665-2768929 retained_intron
  ENSDART00000152135 syncrip-008 2770969-2773840 protein_coding
  ENSDART00000152269 syncrip-006 2768698-2774552 protein_coding
  ENSDART00000152655 syncrip-007 2768971-2773246 protein_coding
  ENSDART00000152697 syncrip-005 2762159-2762727 protein_coding
  ENSDART00000152727 syncrip-004 2760690-2763301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000058779ENSDART00000129870ENSDART00000152135ENSDART00000152269
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000058779 19.923±7.59 37.769±23.51 26.278±6.80 N/A N/A
ENSDART00000129870 15.110±5.22 21.230±9.79 23.792±14.15 8.518±0.00 13.097±0.00
ENSDART00000152135 20.119±0.00 N/A N/A N/A N/A
ENSDART00000152269 19.683±2.35 12.191±1.53 11.574±4.72 6.418±0.00 13.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BO CIL_0006BO_0001 CGP 20:2760603-2892049

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000135316 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Homo_sapiens
ENSMUSG00000032423 Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Mus_musculus

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