C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032423 Syncrip 10090 - 9:88449731-88482574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069221 Syncrip-001 88449739-88482559 protein_coding
  ENSMUST00000172508 Syncrip-009 88479662-88482574 protein_coding
  ENSMUST00000172828 Syncrip-005 88453938-88482149 nonsense_mediated_decay
  ENSMUST00000173405 Syncrip-010 88476866-88481169 protein_coding
  ENSMUST00000173801 Syncrip-002 88455578-88482555 protein_coding
  ENSMUST00000174145 Syncrip-011 88464601-88480744 retained_intron
  ENSMUST00000174269 Syncrip-006 88452640-88482131 protein_coding
  ENSMUST00000174282 Syncrip-003 88452689-88482196 protein_coding
  ENSMUST00000174361 Syncrip-008 88456138-88480753 protein_coding
  ENSMUST00000174391 Syncrip-004 88449731-88482248 protein_coding
  ENSMUST00000174688 Syncrip-007 88452437-88480765 protein_coding
  ENSMUST00000187770 Syncrip-012 88478723-88481224 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069221ENSMUST00000172828ENSMUST00000173801ENSMUST00000174282ENSMUST00000174391ENSMUST00000174688
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069221 2.546±1.00 N/A 7.673±1.18 7.942±1.37 1.756±0.84 N/A 1.533±0.29 2.436±0.10 2.928±1.49 3.478±0.78 3.490±1.57 1.906±0.00 4.218±0.34 N/A
ENSMUST00000172828 N/A N/A N/A 31.428±0.00 N/A N/A N/A N/A N/A N/A 5.518±0.80 36.811±24.67 49.299±33.35 68.909±0.00
ENSMUST00000173801 N/A 6.057±0.00 N/A 11.475±0.00 4.197±0.00 4.709±0.00 2.501±0.15 5.100±0.00 4.923±3.37 N/A N/A 2.916±1.11 10.651±0.22 5.147±1.46
ENSMUST00000174282 N/A N/A N/A 9.522±0.00 N/A N/A 2.131±0.00 N/A 5.801±2.69 N/A 3.301±0.61 10.683±1.49 10.784±3.48 N/A
ENSMUST00000174391 N/A N/A N/A 5.231±0.45 N/A N/A N/A N/A N/A N/A 3.146±1.61 5.520±2.48 2.836±0.00 N/A
ENSMUST00000174688 N/A N/A N/A N/A N/A N/A N/A N/A 4.937±0.63 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616
CIL_0005XJ CIL_0005XJ_0002 CGP 9:88407432-88482574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001649 IEA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 IDA poly(A) binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070934 IEA CRD-mediated mRNA stabilization
GO:0070937 ISS CRD-mediated mRNA stability complex
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071346 IEA cellular response to interferon-gamma
GO:0097452 IEA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026723 syncripl synaptotagmin binding, cytoplasmic RNA interacting protein, like protein_coding Danio_rerio
ENSDARG00000040184 syncrip synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Danio_rerio
ENSG00000135316 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Homo_sapiens

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