C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135316 SYNCRIP 9606 - 6:85607785-85643792 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355238 SYNCRIP-002 85608329-85642991 protein_coding
  ENST00000369622 SYNCRIP-001 85614106-85643285 protein_coding
  ENST00000444272 SYNCRIP-003 85637078-85643792 protein_coding
  ENST00000616122 SYNCRIP-201 85607785-85642922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355238ENST00000369622ENST00000616122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355238 11.629±0.00 10.549±0.00 3.416±0.00 4.976±3.09 7.291±2.40 7.961±2.96 4.475±2.81 8.613±4.64 7.808±2.67 6.955±0.11 5.246±4.57 9.499±1.44 10.564±1.20 10.976±0.64
ENST00000369622 12.370±0.00 16.509±0.00 N/A 11.467±0.00 12.997±0.00 7.195±0.00 7.112±0.00 17.508±0.00 12.047±0.00 6.857±0.00 8.545±0.00 14.350±0.00 18.427±8.26 17.895±3.86
ENST00000616122 3.132±0.00 3.844±0.00 N/A 2.693±0.00 3.383±0.00 N/A 0.855±0.00 2.489±0.00 4.791±0.00 2.168±0.00 1.857±0.00 5.843±1.17 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_0005XI CIL_0005XI_0001 CGP 6:85505496-85615234
CIL_0005XJ CIL_0005XJ_0001 CGP 6:85557978-85643792
CIL_0006BO CIL_0006BO_0002 CGP 6:85607785-87016683

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006396 TAS RNA processing
GO:0008143 IEA poly(A) binding
GO:0008380 TAS RNA splicing
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0017148 IMP negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026723 syncripl synaptotagmin binding, cytoplasmic RNA interacting protein, like protein_coding Danio_rerio
ENSDARG00000040184 syncrip synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Danio_rerio
ENSMUSG00000032423 Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein protein_coding Mus_musculus

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