C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129870 syncrip-201 ENSDARG00000040184 7955 + 20:2760607-2771761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000129870
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000129870 15.110±5.22 21.230±9.79 23.792±14.15 8.518±0.00 13.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BO CIL_0006BO_0001 CGP 20:2760603-2892049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173801 Syncrip-002 protein_coding Mus_musculus 0 340
ENSMUST00000174361 Syncrip-008 protein_coding Mus_musculus 0 339
ENST00000302271 HNRNPR-001 protein_coding Homo_sapiens 0 529
ENST00000355238 SYNCRIP-002 protein_coding Homo_sapiens 0 891
ENST00000369622 SYNCRIP-001 protein_coding Homo_sapiens 0 891
ENST00000374612 HNRNPR-003 protein_coding Homo_sapiens 0 529
ENST00000374616 HNRNPR-002 protein_coding Homo_sapiens 0 488
ENST00000427764 HNRNPR-201 protein_coding Homo_sapiens 4e-24 117
ENST00000434910 RP4-775C13.1-001 processed_pseudogene Homo_sapiens 0 761
ENST00000444272 SYNCRIP-003 protein_coding Homo_sapiens 0 390
ENST00000453465 HNRNPRP1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000463552 HNRNPR-010 processed_transcript Homo_sapiens 9e-23 111
ENST00000476451 HNRNPR-008 processed_transcript Homo_sapiens 0 405
ENST00000478691 HNRNPR-004 protein_coding Homo_sapiens 0 488
ENST00000606561 HNRNPR-011 protein_coding Homo_sapiens 4e-24 117
ENST00000616122 SYNCRIP-201 protein_coding Homo_sapiens 0 761

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