C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 5 (Alport syndrome)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000052063 col4a5 7955 + 7:52558412-52649610 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000073827 col4a5-001 52558412-52649610 protein_coding
  ENSDART00000108738 col4a5-201 52594508-52648383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000073827ENSDART00000108738
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000073827 0.532±0.16 0.215±0.10 0.553±0.06 N/A 0.401±0.00
ENSDART00000108738 N/A N/A N/A 0.007±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0001 CGP 7:52375619-52649610
CIL_0002ST CIL_0002ST_0001 CGP 7:52558412-52704181

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen
GO:0007412 IMP axon target recognition
GO:0030198 IMP extracellular matrix organization
GO:0031290 IMP retinal ganglion cell axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000188153 COL4A5 collagen, type IV, alpha 5 protein_coding Homo_sapiens
ENSMUSG00000031274 Col4a5 collagen, type IV, alpha 5 protein_coding Mus_musculus

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