C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031274 Col4a5 10090 + X:141475385-141689234 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112930 Col4a5-002 141475410-141689180 protein_coding
  ENSMUST00000112931 Col4a5-001 141475385-141689234 protein_coding
  ENSMUST00000128669 Col4a5-004 141658350-141675732 processed_transcript
  ENSMUST00000130732 Col4a5-003 141630124-141689234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112930ENSMUST00000112931ENSMUST00000130732
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112930 N/A N/A N/A N/A 0.927±0.02 0.866±0.30 N/A 1.185±0.00 0.066±0.00 N/A 0.391±0.07 4.722±3.19 0.868±0.81 0.145±0.05
ENSMUST00000112931 2.782±2.12 1.898±0.25 13.035±0.22 0.708±0.27 1.090±0.44 2.018±0.35 3.660±0.12 3.275±0.54 0.193±0.06 8.208±0.55 0.313±0.07 3.833±1.13 1.400±0.81 0.702±0.10
ENSMUST00000130732 0.278±0.00 N/A 5.117±0.00 0.836±0.04 0.801±0.05 2.396±0.69 N/A N/A 0.109±0.03 N/A 0.191±0.06 N/A 0.543±0.46 0.458±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0003 CGP X:141165403-141689234
CIL_0002ST CIL_0002ST_0002 CGP X:141475385-141725263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0007528 IMP neuromuscular junction development
GO:0031594 IDA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052063 col4a5 collagen, type IV, alpha 5 (Alport syndrome) protein_coding Danio_rerio
ENSG00000188153 COL4A5 collagen, type IV, alpha 5 protein_coding Homo_sapiens

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