C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188153 COL4A5 9606 + X:108439844-108697545 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328300 COL4A5-006 108439882-108697541 protein_coding
  ENST00000361603 COL4A5-001 108439882-108697545 protein_coding
  ENST00000470339 COL4A5-005 108439942-108569035 retained_intron
  ENST00000477429 COL4A5-004 108439844-108443091 processed_transcript
  ENST00000483338 COL4A5-002 108582492-108627269 retained_intron
  ENST00000489230 COL4A5-003 108670035-108687500 retained_intron
  ENST00000504541 COL4A5-010 108692822-108696936 protein_coding
  ENST00000505728 COL4A5-011 108622676-108626555 protein_coding
  ENST00000510690 COL4A5-008 108674452-108677579 processed_transcript
  ENST00000515658 COL4A5-009 108681877-108696762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328300ENST00000361603ENST00000470339ENST00000483338ENST00000504541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328300 N/A 1.825±0.00 N/A 0.356±0.00 N/A N/A 0.478±0.00 5.829±0.00 4.986±0.00 1.890±0.81 N/A 2.148±1.40 2.257±0.45 1.951±1.23
ENST00000361603 0.371±0.00 N/A 0.231±0.00 1.603±1.23 0.367±0.00 0.549±0.00 N/A 0.040±0.00 0.034±0.00 N/A 0.257±0.00 0.731±0.41 3.026±0.51 N/A
ENST00000470339 N/A N/A N/A N/A 1.098±0.00 N/A 1.676±0.00 N/A 18.908±0.00 4.665±0.00 N/A N/A N/A N/A
ENST00000483338 N/A N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504541 N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 1.926±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0002 CGP X:108155607-108697545

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 IEA collagen type IV trimer
GO:0005604 IEA basement membrane
GO:0005605 IEA basal lamina
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0007528 IEA neuromuscular junction development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031594 IEA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052063 col4a5 collagen, type IV, alpha 5 (Alport syndrome) protein_coding Danio_rerio
ENSMUSG00000031274 Col4a5 collagen, type IV, alpha 5 protein_coding Mus_musculus

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