C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3b, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000056138 sf3b1 7955 - 9:33194931-33210425 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000078568 sf3b1-001 33194931-33210425 protein_coding
  ENSDART00000141105 sf3b1-002 33207687-33208571 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000078568
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000078568 68.271±19.41 46.919±17.38 65.487±18.24 3.921±0.00 16.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042O CIL_00042O_0001 CGP 9:33139641-33210425
CIL_00042R CIL_00042R_0001 CGP 9:33194931-33221753

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0014032 IMP neural crest cell development
GO:0030318 IGI melanocyte differentiation
GO:0042981 IGI regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000115524 SF3B1 splicing factor 3b, subunit 1, 155kDa protein_coding Homo_sapiens
ENSMUSG00000025982 Sf3b1 splicing factor 3b, subunit 1 protein_coding Mus_musculus

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